Open bwlang opened 1 month ago
I had to add --no-PG to my ubam generation code to avoid name collisions. to reproduce create a ubam with samtools cat and samtool collate. then use samtools collate to product the aligned bam.
here is the specific error: java.lang.IllegalArgumentException: Program record with group id samtools already exists in SAMFileHeader!
I had to add --no-PG to my ubam generation code to avoid name collisions. to reproduce create a ubam with samtools cat and samtool collate. then use samtools collate to product the aligned bam.