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fulcrumgenomics / fgbio

Tools for working with genomic and high throughput sequencing data.
http://fulcrumgenomics.github.io/fgbio/
MIT License
311 stars 67 forks source link

Add tag to store barcode quality in sam for FastqToBam #931

Closed galaxy001 closed 1 year ago

galaxy001 commented 1 year ago

In FastqToBam, there is "--umi-qual-tag" for UMI quality. However, there is no option to save barcode quality to tag. Please add as STAR require quality input at https://github.com/alexdobin/STAR/blob/master/docs/STARsolo.md#input-reads-from-bam-files.

nh13 commented 1 year ago

Seems like a great first issue if you want to help implement the feature and add a unit test or two!

galaxy001 commented 1 year ago

Checked #932 with sbt test, and all tests passed.

nh13 commented 1 year ago

Done in #933!