fulcrumgenomics / fgbio

Tools for working with genomic and high throughput sequencing data.
http://fulcrumgenomics.github.io/fgbio/
MIT License
309 stars 67 forks source link

feat: FastqToBam can extract UMI(s) from the comment in the read name #989

Open nh13 opened 3 months ago

codecov[bot] commented 3 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 95.63%. Comparing base (ba0788e) to head (9856fe1). Report is 12 commits behind head on main.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #989 +/- ## ======================================= Coverage 95.62% 95.63% ======================================= Files 126 126 Lines 7364 7380 +16 Branches 500 498 -2 ======================================= + Hits 7042 7058 +16 Misses 322 322 ``` | [Flag](https://app.codecov.io/gh/fulcrumgenomics/fgbio/pull/989/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=fulcrumgenomics) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/fulcrumgenomics/fgbio/pull/989/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=fulcrumgenomics) | `95.63% <100.00%> (+<0.01%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=fulcrumgenomics#carryforward-flags-in-the-pull-request-comment) to find out more.

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