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funger1990 / digital-pathology

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magnification of TCGA slides #1

Open funger1990 opened 4 years ago

funger1990 commented 4 years ago

Most of TCGA-CRC diagnostic slides are x40 magnification (MPP=0.25), but some are x20 magnification (MPP=0.5). Be careful when tessellate WSI into patches.

funger1990 commented 4 years ago

Below are WSI at other magnification than x40.

['TCGA/TCGA-COAD/TCGA-AA-3494-01Z-00-DX1.E275AF20-3AA7-4191-BD1F-FFE744CA6A2F.svs', 'TCGA/TCGA-COAD/TCGA-AA-3712-01Z-00-DX1.00E0ACE2-8CC5-4063-9C65-3CDD7F21B189.svs', 'TCGA/TCGA-COAD/TCGA-AA-3509-01Z-00-DX1.EAE46823-3132-486F-8C2A-C0F548A08335.svs', 'TCGA/TCGA-COAD/TCGA-AA-3663-01Z-00-DX1.9AEDC003-2062-4876-8993-A5CEE4DDE1A9.svs', 'TCGA/TCGA-READ/TCGA-AG-3725-01Z-00-DX1.86CF8220-F410-49E4-A840-E42AE8C5D8B2.svs', 'TCGA/TCGA-READ/TCGA-AG-3731-01Z-00-DX1.9C30A84C-DD47-47C4-8899-3A1EF5153E1A.svs', 'TCGA/TCGA-COAD/TCGA-AA-3713-01Z-00-DX1.8148ACEB-7C1E-4D29-B908-F3729657EA4F.svs', 'TCGA/TCGA-READ/TCGA-AG-4009-01Z-00-DX1.A66BDD56-216C-4424-8168-9295A307F98F.svs', 'TCGA/TCGA-READ/TCGA-AG-3591-01Z-00-DX1.C06D77F2-D55E-433E-A84D-41E6273C8C61.svs', 'TCGA/TCGA-READ/TCGA-AG-3732-01Z-00-DX1.5EC57511-2B19-4005-BCA0-333C387C66E6.svs', 'TCGA/TCGA-READ/TCGA-AG-3891-01Z-00-DX1.82E8836A-91E7-48CA-A7C1-501A00F20298.svs', 'TCGA/TCGA-READ/TCGA-AG-3742-01Z-00-DX1.E662D7A7-1022-4120-BCB8-845732E07D63.svs', 'TCGA/TCGA-READ/TCGA-AG-3592-01Z-00-DX1.61880D0C-B777-482B-9543-FCA685731B9B.svs', 'TCGA/TCGA-COAD/TCGA-AA-3492-01Z-00-DX1.32D79909-71D5-4843-847E-AECA5DBC963D.svs', 'TCGA/TCGA-COAD/TCGA-AA-3662-01Z-00-DX1.625F1BCC-5E59-411E-AE23-6F43CE6122B2.svs', 'TCGA/TCGA-COAD/TCGA-AA-3660-01Z-00-DX1.CCD0F50D-9991-4CC2-AC77-AD1F78D8CFEB.svs', 'TCGA/TCGA-COAD/TCGA-AA-3697-01Z-00-DX1.AAB8DB74-F76D-4D0A-A50E-E7F97504A3C4.svs', 'TCGA/TCGA-COAD/TCGA-AA-3506-01Z-00-DX1.08CFD143-1A4C-4262-831E-79D9C4BBF453.svs', 'TCGA/TCGA-COAD/TCGA-AA-3511-01Z-00-DX1.F66F89C7-147D-4EE9-A482-61C3033EF443.svs', 'TCGA/TCGA-COAD/TCGA-AA-3655-01Z-00-DX1.D78D8DBE-E74F-491D-AC9C-10E4C4E7BB02.svs', 'TCGA/TCGA-COAD/TCGA-AA-3510-01Z-00-DX1.B4FCE76A-3B60-4D7D-9F3E-973AE17EA8E2.svs', 'TCGA/TCGA-COAD/TCGA-AA-3495-01Z-00-DX1.67DEE36B-724E-4B4F-B3A9-B4E8CCCEFA80.svs', 'TCGA/TCGA-COAD/TCGA-AA-3488-01Z-00-DX1.EDF60198-F7AB-45BB-9A1B-C2E2FA141989.svs', 'TCGA/TCGA-COAD/TCGA-AA-3489-01Z-00-DX1.AE299B70-B14C-4FFE-B1F9-38B2EB267FA9.svs', 'TCGA/TCGA-COAD/TCGA-AA-3496-01Z-00-DX1.B109A6F3-02E0-4181-B69A-00CBA758C074.svs']