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funpopgen / CaVEMaN

Causal Variant Evidence Mapping with Non-parametric resampling
https://funpopgen.github.io/CaVEMaN/
GNU General Public License v3.0
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ERROR: svd of MxN matrix, M<N, is not implemented #3

Open hnaeem opened 3 years ago

hnaeem commented 3 years ago

I am creating a single phenotype bed file from an eQTL list using CaVEMaN with the setting --single-signal. CaVEMaN is displaying the following error message:

376 individuals present in phenotype file. 376 individuals present in genotype file. 377 individuals present in covariates file. id dropped from covariates file. Producing bed file corrected for multiple eQTLs. Finished extracting 1132804 eQTL. Finished extracting 730359 SNPs. Finished reading covariates. gsl: svd.c:285: ERROR: svd of MxN matrix, M<N, is not implemented Default GSL error handler invoked.

Your help will be appreciated.

CaVEMaN was run with parameters: CaVEMaN --single-signal --eqtl eQTL.list --bed gene_expression.bed --vcf ${filename}.vcf.gz --out gene_expression_corrected.bed --cov covariates.txt --verbose

JFF1594032292 commented 2 years ago

I also faced same problem, How did you solved it?