issues
search
fwhelan
/
coinfinder
A tool for the identification of coincident (associating and dissociating) genes in pangenomes.
GNU General Public License v3.0
92
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
More than one value for the 'permit_filter' setting has been specified.
#77
kenken86
opened
3 weeks ago
0
Error in if (any(nc)) x[nc] <- substr(x[nc], 1, len): missing value where TRUE/FALSE needed
#76
GiacomoBroglia
closed
4 months ago
2
Does not progress past the 'calculating lineage dependence' step.
#75
VishnuRaghuram94
closed
4 months ago
9
Using coinfinder for very divergent species
#74
AnnaLew
closed
4 months ago
1
Orthofinder
#73
cfz1998
closed
4 months ago
1
Too difficult to install
#72
cfz1998
closed
8 months ago
2
"Line 7 did not have 2 elements" Error
#71
jack-d-barber
opened
10 months ago
3
Presence and Absence File Error
#70
pthieringer
opened
10 months ago
7
deal with panaroo data better
#69
fwhelan
opened
10 months ago
0
Gexf file is zero bytes
#68
STChoudhury
closed
4 months ago
2
Problem with read.newick() causes no heatmap or network to be produced
#67
dannagifford
closed
4 months ago
1
Write permissions error 'coincident-input-edges.csv'
#66
dannagifford
closed
11 months ago
2
Problem with phytools
#65
AntoniaHab
closed
11 months ago
2
Aborted (core dumped)
#64
MHassanSaeed
closed
1 year ago
6
Question: Is it best to remove highly conal branches? What is the relationship between D value and p value?
#63
martinastoycheva
closed
1 year ago
2
Coinfinder crashes in network generation step
#62
andreaniml
closed
1 year ago
3
Zero length branch fix
#61
bananabenana
closed
2 years ago
1
Error: cannot open file './coinfind-code/check_zeroes.R'
#60
BurinkiWU
closed
1 year ago
2
install dlib
#59
Mirzasalman11
closed
1 year ago
2
install dlib
#58
Mirzasalman11
closed
2 years ago
0
install dlib
#57
Mirzasalman11
closed
2 years ago
0
Feature request: Heatmap output as gridded data (csv/tsv)
#56
amymariecampbell
closed
1 year ago
6
Coinfinder drops gene plus question about D statistics
#55
andreaniml
closed
1 year ago
2
Co-occurence of genes as a requirement for testing disassociation
#54
milnus
closed
2 years ago
4
(core dumped) Rscript check_zeroes.R
#53
sql647
closed
2 years ago
0
Error: Input phylogeny does not appear to be in newick format.
#52
ramadatta
closed
1 year ago
3
Duplicate row names error in "Read in gene_pa file.." step
#51
JoaodcPires
closed
1 year ago
2
Using a tree generated with RAxML hangs at tree loading step
#50
fwhelan
closed
1 year ago
2
R packages issues in conda environment
#49
Salvolachina
closed
2 years ago
5
Added gml files to source files list
#48
gavinmdouglas
closed
2 years ago
2
Feature request: Looking at Specific Genes
#47
spencer411
closed
2 years ago
6
Use with panaroo
#46
spencer411
closed
2 years ago
1
Question about significance correction
#45
chg60
closed
2 years ago
4
Question about independent associate and dissociate binomial tests
#44
gavinmdouglas
closed
2 years ago
23
ld: symbol(s) not found for architecture x86_64 when Linking CXX executable coinfinder
#43
83035706yf
closed
2 years ago
2
Issue with phytools and question regarding isolate number
#42
reymonera
closed
3 years ago
3
Erro in future package
#41
StephanieRodrigues
closed
3 years ago
5
create a .gml output in addition to a .gexf for input into Graphia
#40
fwhelan
closed
1 year ago
2
std::logic_error: More than one value for the 'permit_filter' setting has been specified
#39
RCAFink
closed
3 years ago
3
Potential Cmake issue
#38
lizzietsai
closed
3 years ago
2
heatmap question
#37
spencer411
closed
3 years ago
1
Bioconda install hangs on Solving Environment:...
#36
fwhelan
closed
3 years ago
8
'std::logic_error' while running coinfinder?
#35
dineshkumarsrk
closed
3 years ago
4
header of _pairs.tsv?
#34
ramiroricardo
closed
3 years ago
5
Scoary + Coinfinder: Network Metrics Interpretation
#33
noahaus
closed
3 years ago
2
Error in using coinfinder
#32
vigneshlab
closed
3 years ago
5
Other dataset
#31
bsb2014
closed
3 years ago
4
Plans to Improve Coinfinder for smaller genome datasets
#30
noahaus
closed
3 years ago
2
Error in R processing data
#29
VibrantStarling
closed
3 years ago
1
How to remove columns from roary-style input file
#28
jamiethompson77
closed
3 years ago
4
Next