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g2-bernotas / PS-Plant-Framework

PS-Plant python-based framework presented in "A photometric stereo-based 3D imaging system using computer vision and deep learning for tracking plant growth" paper.
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missing module #5

Closed bhj02 closed 4 years ago

bhj02 commented 4 years ago

This is an interesting project. I am currently implementing your PSPP system in my lab but am stuck with a missing module. When I run 'LeafSegmentationGUI.py', I get the following error message:

Traceback (most recent call last): File "C:\Users\bh-j\Desktop\PSPP\PS-Plant-Framework-dependabot-pip-tensorflow-gpu-1.15.2\LeafSegmentationGUI.py", line 37, in from samples.GigaScience import LeafSegmentationConfig ImportError: No module named 'samples'

Line 37 in 'LeafSementationGUI.py' is .............. 37 from samples.GigaScience import LeafSegmentationConfig .................. This module is needed in Line 150 of the same file. ............... 148 def process(self): 149 MODEL_DIR = os.path.join(MASK_DIR, "logs") 150 config = LeafSegmentationConfig.ArabidopsisLeafSegmentationConfig() ................

Seemingly, I am lack of the module named 'samples.GigaScience'. Could you please include the module or write some direction to fix it?

g2-bernotas commented 4 years ago

Hi @bhj02, thank you for your interest in my work. I am sorry, but it seems that the samples.GigaScience along with the MaskRCNN folder has been deleted from the Github possibly due to the tensorflow-gpu version. In any case, I have now added the missing MaskRCNN folder that has a samples subfolder and within it, you will find GigaScience sub-sub folder and LeafSegmentationConfig.py.