ga4gh-beacon / specification-v2

GA4GH Beacon v2 specification.
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Change description of `AlternateBases` #15

Closed mbaudis closed 4 years ago

mbaudis commented 4 years ago

The description of AlternateBases refers to "symbolic alleles" as being represented in VariantType, and lists a number of those. IMO this is dangerous since it a) binds the documentation to VCF and b) pre-empts a clear definition of which specific variant types will be served by the protocol. Proposal: Replace this part with

Categorical variant queries, e.g. such *not* being represented through sequence & position,  make use of the `VariantType` parameter.