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ga4gh / Get-Started-with-GA4GH-APIs

ISMB 2022 tutorial on FASP and Starter Kit
Apache License 2.0
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The example task on WES should run faster #39

Closed yash-puligundla closed 2 years ago

yash-puligundla commented 2 years ago

Make sure that the task completes in a shorter time (current time taken to complete workflow =~20 min)

yash-puligundla commented 2 years ago

samtools view -c example takes around 20 min as it downloads a large reference file. Replaced samtools view nextflow workflow to samtools-head-nf. This example nextflow workflow takes a few seconds to complete and returns the CRAM header in an output file. It displays the file location in the output section of WES monitor run response as expected.