These are the changes that correspond to the precisionFDA app version 32.
Main changes:
removed run.py, replaced with a simpler shell script
simplified reporting to use a single Jinja2 template and macros
changed stratification region files to be compatible with hap.py v0.3.7 (hap.py 0.3.7 will use the 4th column in the bed file to define subregions, currently, the only way to disable this is to remove that column)
updated documentation and precisionFDA app scripts
These are the changes that correspond to the precisionFDA app version 32.
Main changes: