New app and report - Githubissues

ga4gh / benchmarking-tools

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

Apache License 2.0

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New app and report #28

Closed pkrusche closed 7 years ago

pkrusche commented 7 years ago

These are the changes that correspond to the precisionFDA app version 32.

Main changes:

removed run.py, replaced with a simpler shell script
simplified reporting to use a single Jinja2 template and macros
changed stratification region files to be compatible with hap.py v0.3.7 (hap.py 0.3.7 will use the 4th column in the bed file to define subregions, currently, the only way to disable this is to remove that column)
updated documentation and precisionFDA app scripts
version bump for rtgtools and hap.py submodules