ga4gh / cloud-interop-testing

Interoperable execution of workflows using GA4GH APIs
Apache License 2.0
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Anvil PFB export from GTEx fails on BigQuery import #112

Open ianfore opened 3 years ago

ianfore commented 3 years ago

Exported a PFB file for the GTEX project from Anvil Gen3. Uploaded the avro file to a Google bucket. Use Create table in BigQuery from the Avro file

The import job results in the following error: "Error while reading data, error message: The Apache Avro library failed to parse the header with the following error: Invalid name: Text describing innheritance model"

Note: Posting here as this the work is part of using Search with DRS. The problem seems to be with the PFB exported from Gen3 Anvil. No issue tracker on PFB is available currently.