jaeddy
commented
6 years ago Removing milestone because I'd like to clean this up and file somewhere for posterity.
Open jaeddy opened 6 years ago
jaeddy
commented
6 years ago Removing milestone because I'd like to clean this up and file somewhere for posterity.
Compiling a master list of workflows and environments for the Basel Testbed here. Once we get some of the basic information, we can add some more description/metadata.
Workflows:
TOPMed (CWL, gs)
[x] Registered in Dockstore? (version: 1.29.0)
[x] Checker workflow? (version: 1.29.0)
TOPMed (CWL, https)
[x] Registered in Dockstore? (version: 1.31.0)
[x] Checker workflow? (version: 1.31.0)
TOPMed (WDL, gs)
[x] Registered in Dockstore? (verison: 1.29.0)
[x] Checker workflow? (version: 1.29.0)
TOPMed (WDL, https)
[x] Registered in Dockstore? (verison: 1.31.0)
[x] Checker workflow? (version: 1.31.0)
HCA
[x] Registered in Dockstore? (version: dockstore)
[x] Checker workflow? (version: dockstore)
AGHA (CWL, gs) - bcbio tumor/normal; SNPs indels and structural variants
[x] Checker workflow? (version: master)
AGHA (CWL, keep) - bcbio tumor/normal; SNPs indels and structural variants
[x] Checker workflow? (version: master)
ELIXIR
[ ] Registered in Dockstore? (version: )
[ ] Checker workflow? (version: )
Genomics England
[ ] Registered in Dockstore? (version: )
[ ] Checker workflow? (version: )
WES endpoints:
TOPMed/HCA via Broad (Cromwell)
[x] Endpoint live? (url: http://35.226.102.121:9090)
[x] Auth instructions documented/shared [with orchestrator]? (contact: @geoffjentry)
HCA via CZI (Cromwell)
[x] Endpoint live? (url: https://tsilqioopd.execute-api.us-east-1.amazonaws.com/basel)
[x] Auth instructions documented/shared [with orchestrator]? (contact: @mckinsel)
AGHA via Veritas (Arvados)
[x] Endpoint live? (url: https://wes.qr1hi.arvadosapi.com)
[x] Auth instructions documented/shared [with orchestrator]? (contact: @tetron)
AGHA/GEL via Illumina (Cromwell)
[x] Endpoint live? (url: http://a102be3b8bc3b11e8b0d202055faded5-2029495258.us-west-2.elb.amazonaws.com)
[x] Auth instructions documented/shared [with orchestrator]? (contact: @pr80ik)