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ga4gh / compliance

Compliance test suite for the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
https://ga4gh.org
Apache License 2.0
10 stars 23 forks source link

Add tests to ensure API can recreate source BAM/SAM/CRAM/VCF #123

Open diekhans opened 9 years ago

diekhans commented 9 years ago

This appears not to be the case: https://github.com/ga4gh/server/issues/758

macieksmuga commented 8 years ago

Not sure this is a compliance suite issue, but rather an issue with the API proper (as defined in the schemas repo), as per the above-mentioned discussion in the server repo.

diekhans commented 8 years ago

This is an compliance suite issue, in the sense that we should test that be can to get back the data you put in. However is current impossible to code this test.

There are a number of subtle issues that need to be understood and addressed, such a `placed' reads. The compliance suite can be one force in resolving these issues.

Maciek Smuga-Otto notifications@github.com writes:

Not sure this issue is a compliance suite issue, but rather an issue with the API proper (as defined in the schemas repo), as per the above-mentioned discussion in the server repo.

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david4096 commented 8 years ago

Is there somewhere I can read more about this?

diekhans commented 8 years ago

https://github.com/ga4gh/schemas/issues/505

Although it might be necessary to define exactly what `round trip' means which certain types of data.

David Steinberg notifications@github.com writes:

Is there somewhere I can read more about this?

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