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ga4gh / fasp-scripts

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Incorporate direct FHIR Search into a FASP workflow #16

Closed ianfore closed 2 years ago

ianfore commented 3 years ago

See direct FHIR Search examples using the NCPI FHIR Server which were explored in a Nov 2020 codeathon here .

Some Resources on that server can return DRS ids which could be resolved to URLs by the Kids First DRS Server.

ianfore commented 3 years ago

Brought the code in from the codeathon and renamed. The notebook became https://github.com/ga4gh/fasp-scripts/blob/master/notebooks/search/NCPI_FHIR_approaches.ipynb Checking status of the production NCPI server.

ianfore commented 3 years ago

This notebook contains a FASP workflow using a FHIR search followed by use of DRS ids. It requires access to controlled access data to complete the WES step.

ianfore commented 2 years ago

Addressed in FHIR Kids First Leukemia notebook