Create implementation plan for schema suggestions

[bwalsh]

Task 1:

• Validate that similar queries work with OHSU implementation

    Supporting query by id string only:
    curl 'http://193.62.52.232:8082/ga4gh/genotypephenotype/search' -H 'Content- type:application/json' \-H 'Accept:application/json' -X POST -d '{ "feature":[], "phenotype": ["http://www.ebi.ac.uk/efo/EFO_0000398"], "evidence" : [], "pageSize": 10 }'
    curl 'http://193.62.52.232:8082/ga4gh/genotypephenotype/search' -H 'Content- type:application/json' \-H 'Accept:application/json' -X POST -d '{ "feature":["rs6920220", "rs886774"], "phenotype": [], "evidence" : [], "pageSize": 10 }'
    curl 'http://193.62.52.232:8082/ga4gh/genotypephenotype/search' -H 'Content- type:application/json' \-H 'Accept:application/json' -X POST -d '{ "feature": ["ENSG00000115286"], "phenotype": [], "evidence" : [], "pageSize": 10 }'
    curl 'http://193.62.52.232:8082/ga4gh/genotypephenotype/search' -H 'Content- type:application/json' \-H 'Accept:application/json' -X POST -d '{ "feature":[], "phenotype": [], "evidence" : ["PMID:19684604", "PMID:19915572"], "pageSize": 10 }'

• Pre-requisites: none.
• Start date: ASAP
• Assigned to: OHSU

  Task 2:

• Pick one & implement: Overlap with metadata models is confusing – which should be implemented?
  • Evidence identical
  • Phenotype/ PhenotypeInstance similar
  • Association/ PhenotypeFeatureAssociation different
• Pre-requisites: Acceptance of G2P pull request, consensus on which to implement (follow Sarah's recommendation, let others comment on new PR)
• Start date: ASAP after acceptance of pull request
• Assigned to: ?

  Task 3:

• Incorporate AssociationSet Support for selecting a association set to query ( https://github.com/ohsu-computational-biology/schemas/pull/1)
• Pre-requisites: Acceptance of G2P pull request
• Start date: ASAP after acceptance of pull request

• Assigned to: ? (OHSU & ?)

  Task 4:

  Track implementation of meta data minimum BioSample and Individual model

• Pre-requisites: publish PR of biosample meta data implementation (UCSC)
• Start date: ASAP after acceptance of pull request
• Assigned to: OHSU

[bwalsh]

Task 3 has been accomplished. See https://github.com/ga4gh/server/commit/604d8d182d41026269cf369c062543864d48730d