Related software

[david4096]

Add links in documentation to other ga4gh API related software and how they can be used in relation to this software. Please just comment with links of software that is part of the ga4gh API ecosystem: visualizers, servers, examples, etc.

• ga4gh-gemini - Providing a GA4GH Interface to Gemini Variant Data
• ga4gh-client - Client implementation for accessing GA4GH APIs
• ga4gh-common - common modules for GA4GH schemas, client and server, collected into one package
• picard - A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. http://broadinstitute.github.io/picard/
• ga4gh-mongo - A document based Variant database schema inspired by ga4gh Variants schema.
• https://github.com/pyOpenSci/pyEnsemblRest - covers some ga4gh endpoints as well as others
• ga4gh-catalog - List the contents of a GA4GH server
• GA4GHclient - A Bioconductor package for accessing GA4GH API data servers
• Rga4gh: An Interface to the GA4GH API - An Interface to the GA4GH API that allows users to easily GET responses and POST requests to GA4GH Servers,
• GA4GH .NET Bindings - a project for .NET bindings for GA4GH. Includes sample apps for Xamarin.iOS and Xamarin.Droid. (@tarkvara)

[ljdursi]

Intel Health & Life Sciences has a something for GA4GH api layer atop their GenomicsDB:

https://github.com/Intel-HLS/GenomicsSampleAPIs

[wdesouza]

I would like use this opportunity to share the recently developed GA4GHclient R package publicly available at GitHub. This package simplifies accessing GA4GH API based data servers using R. It also has a web interface for interacting with genomic data (see picture below). We intended to submit our package to Bioconductor project as soon as possible.

Questions and suggestions are very appreciated. Let us know leaving a issue. We are currently working on documentation and examples.

Web application connected at http://1kgenomes.ga4gh.org/.

[kozbo]

Here is another R library developed by Aridhia:

[david4096]

@Welliton309 Wow!

[skeenan]

@Welliton309 and @ljdursi these are both awesome. So cool. We need to highlight these on http://ga4gh.org or on the landing page of http://1kgenomes.ga4gh.org/ (or both!)

[tarkvara]

I've created a project for .NET bindings for GA4GH on CodePlex. Includes sample apps for Xamarin.iOS and Xamarin.Droid.

Still a work in progress, but it should be helpful if anybody is developing mobile apps using GA4GH.

[david4096]

Thanks @tarkvara!

[tarkvara]

CodePlex is shutting down, so the .NET bindings have been moved to GitHub.