ga4gh / gks-portal

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Create comprehensive test examples for VRS 2.0 #10

Open tnavatar opened 1 month ago

tnavatar commented 1 month ago

Submitter Name

Tristan Nelson

Submitter Affiliation

Geisinger

Project Details

Right now there are a small number of data examples that can be used to validate an implementation of VRS:

https://github.com/ga4gh/vrs/blob/2.x/validation/models.yaml

I don't think this set of examples is sufficient to validate a new implementation of VRS (or even the existing VRS-python). It would be good to take this example and create a broader set of variants and VRS entities to allow for implementations that can confidently support the VRS specification.

Required Skills

Knowledge of sources of genetic variation would be helpful to generate examples, otherwise using VRS Python to create some of these examples would be useful as well.