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ga4gh / quality-control-wgs

Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations
https://www.ga4gh.org/product/wgs-quality-control-standards/
Apache License 2.0
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Post Variant Calling Metrics' "Terminologies & Concepts" info #27

Open justinjj24 opened 3 months ago

justinjj24 commented 3 months ago

Add a reference to the specific VCF specs verion to be used for Post Variant Calling Metrics ie is it https://samtools.github.io/hts-specs/VCFv4.2.pdf or https://samtools.github.io/hts-specs/VCFv4.3.pdf

https://github.com/ga4gh/quality-control-wgs/blob/9ad37fc8dae317d670e299a005b0ef8ad06cedf9/metrics_definitions/metrics_definitions.md?plain=1#L212

justinjj24 commented 2 months ago

The version of VCF specs given under Terminologies & Concepts and References PR-31 https://github.com/ga4gh/quality-control-wgs/blob/390020fb1bb5aff77b96acfa84690b2c04c102cb/metrics_definitions/metrics_definitions.md?plain=1#L210

https://github.com/ga4gh/quality-control-wgs/blob/390020fb1bb5aff77b96acfa84690b2c04c102cb/metrics_definitions/metrics_definitions.md?plain=1#L238