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ga4gh / quality-control-wgs

Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations
https://www.ga4gh.org/product/wgs-quality-control-standards/
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Post Variant Calling Metrics' "Terminologies & Concepts" info #30

Closed justinjj24 closed 2 months ago

justinjj24 commented 7 months ago

Let's refer to PASS FILTER as High quality variants (to be in line with our prior use of the term High quality reads) https://github.com/ga4gh/quality-control-wgs/blob/9ad37fc8dae317d670e299a005b0ef8ad06cedf9/metrics_definitions/metrics_definitions.md?plain=1#L210

justinjj24 commented 6 months ago

variants are named as high quality variants instead of PASS FILTER PR-31

https://github.com/ga4gh/quality-control-wgs/blob/73cf8b738517bc06b384c658d1435dfa2f5a1a20/metrics_definitions/metrics_definitions.md?plain=1#L100