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ga4gh
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refget
GA4GH Refget specifications docs
https://ga4gh.github.io/refget
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Steps towards submitting the product to GA4GH
#35
andrewyatz
opened
2 years ago
6
Add ADR for serialisation of sequence collection
#34
tcezard
closed
1 year ago
1
What should be allowable characters in array names?
#33
nsheff
closed
7 months ago
10
Add ADR for using a json-schema to define the sequence collection contents.
#32
nsheff
closed
2 years ago
6
ADR: sequence digest algorithm to be GA4GH digest
#31
andrewyatz
closed
1 year ago
7
Accepted/Recommended Sequence digest algorithms
#30
tcezard
closed
1 year ago
2
Fingerprinting sequences using gaps
#29
andrewyatz
opened
2 years ago
2
Should we specify a search function?
#28
nsheff
opened
2 years ago
6
Should there be endpoints to test existence in database?
#27
nsheff
opened
2 years ago
2
Should we allow PUT sequence collection capability?
#26
nsheff
closed
2 years ago
6
Terminology streamlining: how do we refer to the various levels of seqcol representation?
#25
nsheff
closed
1 year ago
2
ADR for endpoint interface
#24
nsheff
closed
2 years ago
0
API endpoint URL design
#23
nsheff
closed
2 years ago
11
add ADR for return value of the compare endpoint
#22
nsheff
closed
2 years ago
9
Comparison function API specification
#21
nsheff
closed
2 years ago
11
Clean up
#20
nsheff
closed
2 years ago
0
Add draft ADR for no unordered arrays
#19
nsheff
closed
7 months ago
8
add ADR for mandatory arrays
#18
nsheff
closed
7 months ago
1
add ADR for including order in digests
#17
nsheff
closed
3 years ago
4
Would molecule designation also know about how many strands there are?
#16
andrewyatz
opened
3 years ago
4
Reverse complement of a sequence and possible supporting reverse complemented coordinates
#15
andrewyatz
opened
3 years ago
4
ADR for array-based data structure and multi-tiered digests
#14
nsheff
closed
3 years ago
0
Consumption of seqcol into existing file formats
#13
andrewyatz
opened
3 years ago
5
Add list of known attributes that can be included in the digest
#12
tcezard
closed
7 months ago
4
What are example use cases?
#11
ahwagner
opened
3 years ago
3
Approval for array-based data structure and multi-tiered digests for sequence collections
#10
nsheff
closed
1 year ago
4
First pass ADR for allowable characters in sequence names
#9
andrewyatz
closed
3 years ago
3
What information is included within the string-to-digest?
#8
nsheff
closed
7 months ago
45
How will the seqcol compatibility flags be encoded?
#7
nsheff
closed
2 years ago
15
What is the hashing algorithm, and will there be one or multiple?
#6
nsheff
closed
7 months ago
6
Sequence collection, ordered? or unordered?
#5
yfarjoun
closed
7 months ago
46
Will the API offer an alias to digest conversion endpoint?
#4
nsheff
opened
3 years ago
4
How should we specify the metadata endpoint?
#3
nsheff
closed
7 months ago
8
What characters should be allowed in sequence names?
#2
nsheff
closed
2 years ago
16
What characters should we use for delimiters?
#1
nsheff
closed
7 months ago
16
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