We need to model an object for type/class-level representations of Therapeutic Interventions (as opposed to specific instances that occur on specific occasions toward particular patients). The driving use case for this is the descriptor/object in Therapeutic Response Annotations, as described in #31. A few initial thoughts are below:
A therapeutic intervention is a process in which some form of treatment is administered to a patient - be it chemical (e.g. a drug), physical (e.g. acupuncture, radiation), behavioral, etc.
The model will have to support simple interventions comprised of a single type of drug exposure, and combination treatments that include multiple exposures/interventions as part (e.g. multiple drugs).
It may also need to support modeling of temporal aspects of interventions - including things like sequence in which interventions are applied, intervals between interventions, dosage or duration of treatments, etc.
It may have to include representations of specific drugs (e.g. erlotinib) as well as drug categories (e.g. EGFR inhibitors)
Once we have clearly defined requirements and a straw man proposal, we should reach out to other GA4GH groups that may have need for a similar object (e.g. ClinPheno), and also consider if/how we might leverage SchemaBlocks here.
For now (for v0) we have defined the very simple and naive model here, which will support initial testing, but ultimately be replaced by a richer model developed in collaboration with other groups.
We need to model an object for type/class-level representations of Therapeutic Interventions (as opposed to specific instances that occur on specific occasions toward particular patients). The driving use case for this is the descriptor/object in Therapeutic Response Annotations, as described in #31. A few initial thoughts are below:
Once we have clearly defined requirements and a straw man proposal, we should reach out to other GA4GH groups that may have need for a similar object (e.g. ClinPheno), and also consider if/how we might leverage SchemaBlocks here.