gaarangoa / deeparg

A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deepARG-LS.
MIT License
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Deprecation Warning #2

Closed SelfShubham closed 9 months ago

SelfShubham commented 11 months ago

Whenever I run deeparg I get warning message.
Command given - deeparg predict --help /home/ncim/anaconda3/envs/deeparg_env/lib/python2.7/site-packages/theano/tensor/signal/downsample.py:6: UserWarning: downsample module has been moved to the theano.tensor.signal.pool module. "downsample module has been moved to the theano.tensor.signal.pool module.") /home/ncim/anaconda3/envs/deeparg_env/lib/python2.7/site-packages/sklearn/cross_validation.py:41: DeprecationWarning: This module was deprecated in version 0.18 in favor of the model_selection module into which all the refactored classes and functions are moved. Also note that the interface of the new CV iterators are different from that of this module. This module will be removed in 0.20. "This module will be removed in 0.20.", DeprecationWarning)

Below this I get the usual help options

gaarangoa commented 9 months ago

this is just a warning and shouldn't affect the results of running deeparg.