How to run longitudinal recon-all on qsub?

gablab / mindhive

scripts, wiki and issues related to mindhive

mindhive.mit.edu

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Closed akeshavan closed 12 years ago

akeshavan commented 12 years ago

How would we run:

recon-all -base template_SAD_019 -tp SAD-019 -tp SAD2_019 -all

on the cluster? We tried:

recon-all-pbs -base template_SAD_019 -tp SAD-019 -tp SAD2_019 -all -q recon

but it didn't work!

satra commented 12 years ago

how about:

ezsub -c "recon-all -base template_SAD_019 -tp SAD-019 -tp SAD2_019 -all"

akeshavan commented 12 years ago

Thanks!