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gabrielodom / pathwayPCA

integrative pathway analysis with modern PCA methodology and gene selection
https://gabrielodom.github.io/pathwayPCA/
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Suppl. Vignette 5 error #66

Closed gabrielodom closed 2 years ago

gabrielodom commented 5 years ago

When I check the package, I get this error:

Quitting from lines 250-252 (Supplement5-Analyse_Results.Rmd) Error: processing vignette 'Supplement5-Analyse_Results.Rmd' failed with diagnostics: object 'featureID' not found Execution halted Error in processx::run(bin, args = real_cmdargs, stdout_line_callback = real_callback(stdout), : System command error Calls: ... eval -> eval -> with_envvar -> force ->

I can build the vignette just fine, but it errors in devtools::check().

gabrielodom commented 5 years ago

I looked into this again because of Issue #83, and I am certain it is due to dplyr NSE in the TidyLoading() function. I can run all of the code in the console. I knit the vignette. But I can't run devtools::build_vignettes().

gabrielodom commented 3 years ago

Hey, good news! I fixed this by replacing the mutate(X = fun(X)) syntax and it worked. Not sure why though.

gabrielodom commented 2 years ago

I guess I forgot to close this?