Add initial testing suite for top-level functions

gabrielodom / pathwayPCA

integrative pathway analysis with modern PCA methodology and gene selection

https://gabrielodom.github.io/pathwayPCA/

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Add initial testing suite for top-level functions #71

Closed gabrielodom closed 5 years ago

gabrielodom commented 5 years ago

We need some bare-bones tests for the major user-facing functions:

CreateOmics
CreatePathwayCollection (DONE?)
AESPCA_pVals
SuperPCA_pVals
LoadOntoPCs
SubsetPathwayData
getPathPCLs
getPathpVals

We have very detailed interactive testing scripts (formerly in testing_files/), but we need to massage these into proper unit tests. We will use the testthat package.