Error in read_gmt in R 4.0.0

gabrielodom / pathwayPCA

integrative pathway analysis with modern PCA methodology and gene selection

https://gabrielodom.github.io/pathwayPCA/

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Error in read_gmt in R 4.0.0 #88

Closed lubianat closed 4 years ago

lubianat commented 4 years ago

Hello,

I use the function read_gmt in one of my packages. It is currently failing after upgrading to R 4.0.0: `> gmt_in <- pathwayPCA::read_gmt(gmt_fname) Error in readChar(file, nchars = nChars, useBytes = TRUE) : invalid 'nchars' argument

traceback() 2: readChar(file, nchars = nChars, useBytes = TRUE) 1: pathwayPCA::read_gmt(gmt_fname)`

Do you know what might be going on?

Best, Tiago

lubianat commented 4 years ago

oops, my bad, actually the problem was with another package.