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gabrielodom / pathwayPCA

integrative pathway analysis with modern PCA methodology and gene selection
https://gabrielodom.github.io/pathwayPCA/
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system.file() function #95

Closed Prometheus405 closed 1 year ago

Prometheus405 commented 1 year ago

Im trying to load .gmt file into my project. Unfortunately function system.file() can't find my file. Pathway file has been downloaded from MSigDB - curated gene sets. I tried adding path to file and still no success.

gmt_path <- system.file('extdata', 'c2.all.v2022.1.Hs.entrez.gmt', package = "pathwayPCA" ,mustWork = TRUE)

gabrielodom commented 1 year ago

Issue resolved here: https://support.bioconductor.org/p/9147504/