I'm trying to generate an odx from the kineticEFITtime generated ods (/cscratch/mcclenaghanj/tmp/ods.h5) but I am running into the following error:
OMFIT['odx'] = ods_2_odx(OMFIT['kineticEFITtime']['OUTPUTS']['ods'])
Traceback (most recent call last):
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/OMFIT-source/omfit/classes/OMFITx.py", line 4189, in manage_user_errors
tmp=command(**kw)
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/OMFIT-source/omfit/utils_tk.py", line 1063, in GlobLoc_tk
return py.run(_relLoc=self.namespace, _OMFITscriptsDict=False, _OMFITconsoleDict=True, noGUI=None)
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/OMFIT-source/omfit/classes/omfit_python.py", line 1082, in run
result = self.__run__(**kw)
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/OMFIT-source/omfit/classes/omfit_python.py", line 931, in __run__
self, userDict=kw, inputDict=_relLoc, persistentDict=OMFITconsoleDict, runDict={}, prerun=prerun, postrun=postrun
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/OMFIT-source/omfit/classes/omfit_python.py", line 129, in f_locked
return f(*args, **kw)
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/OMFIT-source/omfit/classes/omfit_python.py", line 362, in execGlobLoc
exec(compile(execString, filename, "exec"), GlobLoc)
File "/local-scratch/mcclenaghanj/OMFIT/OMFIT_2020-12-22_11_24_10_134745/project/OMFIT command box #21", line 1, in <module>
OMFIT['odx'] = ods_2_odx(OMFIT['kineticEFITtime']['OUTPUTS']['ods'])
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/miniconda3/lib/python3.7/site-packages/omas/omas_ds.py", line 131, in ods_2_odx
return ODX(ods.dataset())
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/miniconda3/lib/python3.7/site-packages/omas/omas_core.py", line 1729, in dataset
DS.update(self[ds].dataset(homogeneous=homogeneous))
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/miniconda3/lib/python3.7/site-packages/omas/omas_core.py", line 1800, in dataset
DS[fukey] = xarray.DataArray(data, dims=coordinates[fukey])
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/miniconda3/lib/python3.7/site-packages/xarray/core/dataset.py", line 1292, in __setitem__
self.update({key: value})
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/miniconda3/lib/python3.7/site-packages/xarray/core/dataset.py", line 3638, in update
merge_result = dataset_update_method(self, other)
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/miniconda3/lib/python3.7/site-packages/xarray/core/merge.py", line 937, in dataset_update_method
combine_attrs="override",
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/miniconda3/lib/python3.7/site-packages/xarray/core/merge.py", line 592, in merge_core
coerced, join=join, copy=False, indexes=indexes, fill_value=fill_value
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/miniconda3/lib/python3.7/site-packages/xarray/core/alignment.py", line 412, in deep_align
fill_value=fill_value,
File "/fusion/projects/codes/atom/omfit_v3/atom_SATURN_GCC/miniconda3/lib/python3.7/site-packages/xarray/core/alignment.py", line 320, in align
% (dim, unlabeled_sizes, labeled_size)
ValueError: arguments without labels along dimension '__core_profiles_measured_:_1_index1__' cannot be aligned because they have different dimension size(s) {97} than the size of the aligned dimension labels: 155```
I'm trying to generate an odx from the kineticEFITtime generated ods (/cscratch/mcclenaghanj/tmp/ods.h5) but I am running into the following error: