IMAS <> GKDB compatibility

[Karel-van-de-Plassche]

I've merged a small modification of the GKDB.json into master. This updates the .json file you copied accordingly.

Some background how this happend GKDB data format was originally explicitly not IMAS-compatible, as we wanted to be more flexible, as well have a structure that can be easily stored in noSQL/SQL databases. As such, the GKDB JSON specification was born. After it was 'finished', IMAS took the structure and adopted it as their 'gyrokinetic IDS'. Unfortunately this adoption was not 1-to-1, and as such the GKDB JSON was not IMAS compatible anymore (it was never intended as such)

What I've done As the GKDB JSON is so extremely close to OMAS-style IMAS compatibility, I've just changed the GKDB JSON specification. Now it's IMAS compatible, but not OMAS-IMAS compatible yet. I'm adding OMAS compatibility tests in here: https://gitlab.com/gkdb/gkdb/merge_requests/2, combined with a directory cleanup. Feel free to join in.

What needs to be done still (In this pull request or in a separate one): Looks like the data shapes are not correctly handled in the pythonization of the JSON. Specifically two issues that fail the coordinate shape test here omas_core.py#L622, which I don't think should fail:

• For eigenvalue runs, time_norm has no meaning. In the GKDB JSON format, we allow a field being null (or None in Python). This should be interpreted as that the coordinate has size 1. If you think the field should be [null] instead of null for easier integration, we can change that
• phi_potential_perturbed_norm_real and related fields can be 1D-ish, as the timebase can have length one. Seems like OMAS instead squeezes out this length-1 dimension, resulting in a wrongly shaped array (1D instead of 2D), thus failing the test
• Looks like the load instance methods ODS.load and ODS.load_structure disappeared, so the example currently fails

What I hope to do in the very long term Open source the IMAS-DD and associated tools. Discussion ongoing, but slow, as it is subject to the ITER rules and legislation.

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Merging #79 into master will not change coverage. The diff coverage is n/a.

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  Misses       1414     1414

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[orso82]

• For eigenvalue runs, time_norm has no meaning. In the GKDB JSON format, we allow a field being null (or None in Python). This should be interpreted as that the coordinate has size 1. If you think the field should be [null] instead of null for easier integration, we can change that

According to the IMAS specification time_norm should be an array of floats. Possibly we could use [0.0] for eigenvalue runs?

• phi_potential_perturbed_norm_real and related fields can be 1D-ish, as the timebase can have length one. Seems like OMAS instead squeezes out this length-1 dimension, resulting in a wrongly shaped array (1D instead of 2D), thus failing the test

The data itself is saved as 1D array, rather than 2D array. On the other hand, I agree that OMAS should check for the coordinates, but it used not to do this when you were loading from data file. I have now fixed this with 94df05b . I have released version 0.49.1. With the update, now running the connect_gkdb.py example leads to the following warnings:

``` gyrokinetics.model.time_interval_norm must be an array with dimensions: ['1...2'] gyrokinetics.wavevector.0.eigenmode.0.a_field_parallel_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.a_field_parallel_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.b_field_parallel_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.b_field_parallel_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.phi_potential_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.phi_potential_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.0.eigenmode.0.time_norm must be an array with dimensions: ['1...N'] gyrokinetics.wavevector.1.eigenmode.0.a_field_parallel_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.a_field_parallel_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.b_field_parallel_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.b_field_parallel_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.phi_potential_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.phi_potential_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.0.time_norm must be an array with dimensions: ['1...N'] gyrokinetics.wavevector.1.eigenmode.1.a_field_parallel_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.a_field_parallel_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.b_field_parallel_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.b_field_parallel_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.density_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.density_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.density_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.density_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.density_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.density_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.density_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.density_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.phi_potential_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.phi_potential_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.1.time_norm must be an array with dimensions: ['1...N'] gyrokinetics.wavevector.1.eigenmode.2.a_field_parallel_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.a_field_parallel_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.b_field_parallel_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.b_field_parallel_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.density_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.density_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.density_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.density_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.density_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.density_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.density_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.density_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.phi_potential_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.phi_potential_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.1.eigenmode.2.time_norm must be an array with dimensions: ['1...N'] gyrokinetics.wavevector.2.eigenmode.0.a_field_parallel_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.a_field_parallel_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.b_field_parallel_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.b_field_parallel_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.density_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.temperature_perpendicular_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.0.moments_norm_rotating_frame.velocity_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.density_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.temperature_perpendicular_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_gyroaveraged_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.fluxes_moments.1.moments_norm_rotating_frame.velocity_parallel_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.phi_potential_perturbed_norm_imaginary must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.phi_potential_perturbed_norm_real must be an array with dimensions: ['gyrokinetics.wavevector[:].eigenmode[:].poloidal_angle', 'gyrokinetics.wavevector[:].eigenmode[:].time_norm'] gyrokinetics.wavevector.2.eigenmode.0.time_norm must be an array with dimensions: ['1...N'] ```

• Looks like the load instance methods ODS.load and ODS.load_structure disappeared, so the example currently fails

Uhm, I am not sure what you mean by ODS.load and ODS.load_structure disappeared.

[Karel-van-de-Plassche]

According to the IMAS specification time_norm should be an array of floats. Possibly we could use [0.0] for eigenvalue runs?

NaN is also a float right? [null] which is interpreted as [NaN] seems to be accepted by OMAS at least.

With the update, now running the connect_gkdb.py example leads to the following warnings

Did a small test, seems we can solve that on our side to indeed save everything as a 2D array (with [[val, .., val]], will change that accordingly.

Uhm, I am not sure what you mean by ODS.load and ODS.load_structure disappeared

Must've done something weird, as I also cannot reproduce. You can ignore this comment.