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gagneurlab / FRASER-analysis

Accompanying analysis code for the FRASER manuscript
https://tinyurl.com/FRASER-paper
MIT License
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There is no install_dependencies.R file at /src/r/ #1

Open canankolakoglu opened 3 years ago

canankolakoglu commented 3 years ago

Hello,

I'm student of systems biology and bioinformatics graduate program and I aimed to reproduce FRASER. I have followed the constructions of readme.md and downloaded the repo and its dependencies. I've cloned FRASER, Leafcutter and FRASER analysis code github repos. Finally I've downloaded wBuild and tried to run the full pipeline. When I run to make sure all packages needed in the analysis are installed using Rscript command, I realized that there is no install_dependencies.R in the /src folder of repo. And I cannot continue to run rest of full pipeline that I guess it is caused by the lack of dependencies informations. How can I obtain this .R file?

Thank you.

Hoeze commented 3 years ago

@ischeller @c-mertes did you see this issue?