Can Split-read data for the Kremer et al. dataset be used directly as input?

gagneurlab / FRASER-analysis

Accompanying analysis code for the FRASER manuscript

https://tinyurl.com/FRASER-paper

MIT License

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Can Split-read data for the Kremer et al. dataset be used directly as input? #3

Open RacconC opened 2 years ago

RacconC commented 2 years ago

I am trying to reproduce the results of FRASER on the application of rare disease diagnosis and I downloaded the split read data from the link given in the article (https://doi.org/10.5281/zenodo.4271599). I found that due to structural issues, this data could not be used directly as input, but only merged. What can I do to make it available as direct input?

RacconC commented 2 years ago

And I can't download the raw data from the GTEx dataset due to permission issues.