I am using Fraser on count table generated by featurecounts(split reads + non split reads) for splice sites. I have given unique ID to each splice site. Both tables shares ID( junction count endID == splicesiteCount, spliceSiteID). For junction count table "startID" is the just number of rows(1,2,3,4 and so on). Each table is sorted by chromosome and start coordinate. This is how, I created table for FRASER.
Fraserdata set creation was successful. But I am facing problem in PSI value calculation:
fds <- calculatePSIValues(fds)
After calculating psi3 and 5values, It is giving following error:
Calculating the PSI site values:
0% Error: subscript contains invalid names
Execution halted.
Can you please help me with this? Am I using wrong format of table?
Thank you.
Dear Team,
I am using Fraser on count table generated by featurecounts(split reads + non split reads) for splice sites. I have given unique ID to each splice site. Both tables shares ID( junction count endID == splicesiteCount, spliceSiteID). For junction count table "startID" is the just number of rows(1,2,3,4 and so on). Each table is sorted by chromosome and start coordinate. This is how, I created table for FRASER.
Fraserdata set creation was successful. But I am facing problem in PSI value calculation: fds <- calculatePSIValues(fds)
After calculating psi3 and 5values, It is giving following error:
Calculating the PSI site values:
0% Error: subscript contains invalid names
Execution halted.
Can you please help me with this? Am I using wrong format of table? Thank you.