gagneurlab / FRASER

FRASER - Find RAre Splicing Events in RNA-seq
MIT License
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"Please provide hgnc symbols to compute gene p values!" error #39

Open bw2 opened 2 years ago

bw2 commented 2 years ago

I'm trying to run the latest version of FRASER. Everything works until I get to the results(..) function. The following code

library(FRASER)
library(annotables)
library(data.table)
library(ggplot2)
library(ggpubr)
library(dplyr)
library(purrr)
library(ggrepel)
library(plotly)
library(stringr)
library(RColorBrewer)
library(ggsci)
library(ggplot2)
library(gtable)

fds = loadFraserDataSet(".")

res = results(fds, padjCutoff={padj_threshold}, zScoreCutoff=NA, deltaPsiCutoff={delta_psi_threshold})

terminates with a "Please provide hgnc symbols to compute gene p values!" error.

I'm having a hard time tracing how the results(..) function even reaches that error which AFAIK is only raised by the aberrant(..) function when aggregate is True.

bw2 commented 2 years ago

The error is actually happening in plotAberrantPerSample(..)