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gagneurlab / FRASER

FRASER - Find RAre Splicing Events in RNA-seq
MIT License
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Error in H5Fcreate(file) : HDF5. File accessibilty. Unable to open file. #40

Open ritetsu opened 2 years ago

ritetsu commented 2 years ago

Hello!

I was trying to use FRASER with some test samples, and got error at countRNAdata step, my commond and output:

> fds <- countRNAData(settings)
Fri Jun 10 10:43:07 2022: Start counting the split reads ...
Fri Jun 10 10:43:07 2022: Count split reads for sample: Test1
Fri Jun 10 10:43:08 2022: Count split reads for sample: Test2
Fri Jun 10 10:49:52 2022 : count ranges need to be merged ...
Fri Jun 10 10:49:55 2022: Create splice site indices ...
Fri Jun 10 10:49:57 2022: Writing split counts to folder: /home/fraser/workingdir/savedObjects/Data_Analysis/splitCounts
Error in H5Fcreate(file) : HDF5. File accessibilty. Unable to open file.

I tried with both R3.6.1/R4.0.3 and single core/multicores.

Do you have any suggestions on this error?

Thanks a lot! Zhe