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gagneurlab / FRASER

FRASER - Find RAre Splicing Events in RNA-seq
MIT License
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Merging Multiple Samples #56

Open GuoLabUCSD opened 1 year ago

GuoLabUCSD commented 1 year ago

Dear C. Mertes,

I would like to run FRASER on a dataset of 47 BAM files. However, when running the countRNAData function I keep getting out of memory errors. Is it possible to run fds <- countRNAData(createTestFraserSettings()) on each sample individually, and then merge the resulting fds objects? If not, do you know how I can best get around this issue? Thanks in advance!

vyepez88 commented 4 months ago

Hi, you would have to run it in a cluster. You can count one sample at a time if needed.