Open fburdet opened 1 year ago
I get the same error running FRASER via DROP. Happens only intermittently. I think its inadequate memory?
Hi, yes, we have seen this happening, most likely due to the program running out of memory. Can you please try rerunning it? If using DROP, use the -k
parameter on the snakemake run, and be sure to have recount: FALSE
in the config file.
Hello,
I installed the package on an Ubuntu 22 server.
When running fds <- countRNAData(settings) with my own data (ONT bam files), the first steps work ok, but then I get
Mon Aug 29 17:58:49 2022: In total 239257 splice sites (acceptor/donor) will be counted ... Error in reducer$value.cache[[as.character(idx)]] <- values : wrong args for environment subassignment In addition: Warning message: In parallel::mccollect(wait = FALSE, timeout = 1) : 1 parallel job did not deliver a result
What could be the issue?
Thanks