We need to run around 400 samples (each is RNA-seq data from one of the patients) but the FRASER crashes. (It runs ok with lower number of samples - <25).
Programm is killed when running function countRNAData().
with the following error: Error in sendMaster(try(eval(expr, env), silent = TRUE), FALSE) :
ignoring SIGPIPE signal
Calls: countRNAData ... bploop.lapply -> .send_to -> .send_to -> -> sendMaster
Error in sendMaster(try(eval(expr, env), silent = TRUE), FALSE) :
ignoring SIGPIPE signal
Calls: countRNAData ... bploop.lapply -> .send_to -> .send_to -> -> sendMaster
The parallelization should be turned on by the following code:
if(.Platform$OS.type == "unix") { register(MulticoreParam(workers=min(10, multicoreWorkers())))
} else { register(SnowParam(workers=min(10, multicoreWorkers()))) }
CPUs: 8 memory: 32849380 storage: /home total: 11T used: 2,7T free: 8,3T
The parallelization should be turned on by the following code: if(.Platform$OS.type == "unix") { register(MulticoreParam(workers=min(10, multicoreWorkers()))) } else { register(SnowParam(workers=min(10, multicoreWorkers()))) }