Go back to raw data after using FRASER::results()

gagneurlab / FRASER

FRASER - Find RAre Splicing Events in RNA-seq

MIT License

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Go back to raw data after using FRASER::results() #83

Closed fburdet closed 3 months ago

fburdet commented 1 year ago

Hello,

I would like to see the raw data that was used to generate p-values and z-scores in the results() table. For example, fds_filtered@assays@data[["psi5"]], and see the values by sample.

However, I don't seem to be able to get back to it using the concatenation of seqnames : ranges. Are these coordinates changed somehow when running res() ?

Or is it again a problem of species?

Thanks in advance!

vyepez88 commented 3 months ago

Hi, yes, try: assays(fds)$psi5 You can see all the assays using: names(assays(fds))