gagneurlab / MMSplice_MTSplice

Tissue-specific variant effect predictions on splicing
MIT License
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Refactor mmsplice with `kipoiseq` and `pyranges` #11

Closed MuhammedHasan closed 5 years ago

MuhammedHasan commented 5 years ago

pyranges overlaps exon with high performance. So it can be used rather than interval tree.

kipoiseq have nice extractors which can be replace our dataloader and can increase performance.