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gagneurlab / drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
MIT License
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TypeError in file /DATA/drop_demo/Snakefile, line 12: expected str, bytes or os.PathLike object, not NoneType #515

Open Acetyl-ZHOU opened 9 months ago

Acetyl-ZHOU commented 9 months ago

Hi I download data from "https://www.cmm.in.tum.de/public/paper/drop_analysis/resource/",and run this directly. But I got some error like this . TypeError in file /DATA/drop_demo/Snakefile, line 12: expected str, bytes or os.PathLike object, not NoneType File "/DATA/drop_demo/Snakefile", line 12, in <module> File "/DATA/anaconda3/envs/drop_env/lib/python3.11/site-packages/wbuild/utils.py", line 310, in __init__

can you give me some help?

vyepez88 commented 7 months ago

Hi, did you download the data by executing drop demo or how? Which command did you run to get that error? It seems some paths of your config file are empty

AtaJadidAhari commented 1 month ago

Hi @Acetyl-ZHOU, did you manage to resolve this issue?