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galanisd / omtd-simple-workflows

Provides scripts and code for executing some text mining workflows within a docker container.
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XMI file parsing tool #4

Closed JKChang2015 closed 7 years ago

JKChang2015 commented 7 years ago

Hello, I would like to parse and visualise the text mining result (XMI file) for CHEBI workflow. Could you please let me know which tool / package can be used for this purpose? Thank you.

galanisd commented 7 years ago

Hello,

This repo was created in the context of OpenMinTeD project. The output you have is from the CHEBI workflow which has been deployed as a web service @ Univ. of Manchester (UNIMAN). I think that you should ask UNIMAN for this ...I will fwd you message to them. You probably need the respective UIMA typesystem and libraries etc.

nguyennth commented 7 years ago

Hello,

We're sorry that the XMI parser component hasn't been available in OpenMinTeD yet. In the meantime, you probably want to try UIMAFit XMI Reader: http://ctakes.apache.org/apidocs/4.0.0/org/apache/ctakes/dependency/parser/ae/util/XMIReader.html

Hope this helps.

JKChang2015 commented 7 years ago

Hello,

@stampit12 Thank you. Is it possible to visualise the XMI file in brat system?

nguyennth commented 7 years ago

Hi,

I'm afraid brat can't read XMI, please check brat file format here: http://brat.nlplab.org/standoff.html So, if you can convert the XMI result into the standoff format, brat can visualise your result.

JKChang2015 commented 7 years ago

OK，Thank you for your help.