galaxyproject / ansible-galaxy-tools

An Ansible role for automated installation of tools from a Tool Shed into Galaxy.
MIT License
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Create Galaxy bootstrap user Error #56

Open thanhleviet opened 5 years ago

thanhleviet commented 5 years ago

The script manage_bootstrap_user.py was trying to parse an ini file instead of a yml.

fatal: [galaxy-ubuntu]: FAILED! => {"changed": true, "cmd": ["/home/galaxy/venv/bin/python", "manage_bootstrap_user.py", "-c", "/home/galaxy/config/galaxy.yml", "create", "-e", "admin@galaxy.org", "-u", "cloud", "-p", "admin", "-a", "admin"], "delta": "0:00:02.683745", "end": "2018-12-06 20:54:10.927082", "failed": true, "msg": "non-zero return code", "rc": 1, "start": "2018-12-06 20:54:08.243337", "stderr": "Traceback (most recent call last):\n File \"manage_bootstrap_user.py\", line 265, in <module>\n create_bootstrap_user(args.config, args.username, args.email, args.password, args.preset_api_key)\n File \"manage_bootstrap_user.py\", line 207, in create_bootstrap_user\n app = get_bootstrap_app(ini_file)\n File \"manage_bootstrap_user.py\", line 197, in get_bootstrap_app\n config_parser.read(ini_file)\n File \"/usr/lib/python2.7/ConfigParser.py\", line 305, in read\n self._read(fp, filename)\n File \"/usr/lib/python2.7/ConfigParser.py\", line 512, in _read\n raise MissingSectionHeaderError(fpname, lineno, line)\nConfigParser.MissingSectionHeaderError: File contains no section headers.\nfile: /home/galaxy/config/galaxy.yml, line: 1\n'---\\n'", "stderr_lines": ["Traceback (most recent call last):", " File \"manage_bootstrap_user.py\", line 265, in <module>", " create_bootstrap_user(args.config, args.username, args.email, args.password, args.preset_api_key)", " File \"manage_bootstrap_user.py\", line 207, in create_bootstrap_user", " app = get_bootstrap_app(ini_file)", " File \"manage_bootstrap_user.py\", line 197, in get_bootstrap_app", " config_parser.read(ini_file)", " File \"/usr/lib/python2.7/ConfigParser.py\", line 305, in read", " self._read(fp, filename)", " File \"/usr/lib/python2.7/ConfigParser.py\", line 512, in _read", " raise MissingSectionHeaderError(fpname, lineno, line)", "ConfigParser.MissingSectionHeaderError: File contains no section headers.", "file: /home/galaxy/config/galaxy.yml, line: 1", "'---\\n'"], "stdout": "", "stdout_lines": []}