Trinity de novo hung cloning

galaxyproject / cloudlaunch

Easily launch cloud applications.

https://launch.usegalaxy.org/

MIT License

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Trinity de novo hung cloning #241

Closed pfordnc closed 3 years ago

pfordnc commented 4 years ago

I was able to successfully deploy the Genomics appliance into AWS I get connected to it via the public IP address and launch Galaxy from the main page then I go to Admin => Tool Shed => & attempt to load Trinity De Novo it hangs "cloning" for more than 2 hours. where can I look to try & troubleshoot this issue. many thanks!

nuwang commented 4 years ago

@pfordnc When installing tools, make sure not to select the shed_tool_conf.xml as the target, as that's read only. At present, this is still selected by default, but I believe a fix was either already made or is in the works. Also unselect dependencies as follows: