It would be great if make-families.sh would identify where the barcode ends based on detecting the constant 5bp sequence that follows it.
It can't rely on an exact match, though, since that would throw out all reads with errors in those 5bp.
This would also help in cases where there was an error in the protocol which resulted in invalid barcodes, since this feature could discard reads without an identifiable constant sequence.
It would be great if
make-families.shwould identify where the barcode ends based on detecting the constant 5bp sequence that follows it.It can't rely on an exact match, though, since that would throw out all reads with errors in those 5bp.
This would also help in cases where there was an error in the protocol which resulted in invalid barcodes, since this feature could discard reads without an identifiable constant sequence.