align_families.py: Kalign crash on short reads

galaxyproject / dunovo

Reference-free duplex sequencing pipeline.

Other

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Closed NickSto closed 6 years ago

NickSto commented 6 years ago

*** Error inpython': malloc(): memory corruption: 0x0000000000ded600 ***`

The error is in aln_to_strs() in kalign2_output.c.

NickSto commented 6 years ago

Actually, it looks like it happens on extremely uneven read lengths in the alignment (a bunch of 24bp reads with one 234bp read, in one case).

NickSto commented 6 years ago

Fixed in 5228b1e.