Fix `shed-tools test -t workflow_tools.yml`

galaxyproject / ephemeris

Library for managing Galaxy plugins - tools, index data, and workflows.

https://ephemeris.readthedocs.org/

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Fix `shed-tools test -t workflow_tools.yml` #155

Closed nsoranzo closed 4 years ago

nsoranzo commented 4 years ago

The tool_shed URLs returned by Galaxy via get_tool_panel() don't have a protocol part, while the tool_shed_url field in YAML files generated by workflow-to-tools start with an https:// . This resulted in testing 0 tools when shed_tools is invoked on such a YAML file.