Below error was generated when running run-data-managers. I suppose this was because the galaxy url was not properly prepended to the /api part. With this fix the problem seems to be solved.
Traceback (most recent call last):
File "/usr/local/bin/run-data-managers", line 11, in
sys.exit(main())
File "/usr/local/lib/python2.7/dist-packages/ephemeris/run_data_managers.py", line 80, in main
run_dm(args)
File "/usr/local/lib/python2.7/dist-packages/ephemeris/run_data_managers.py", line 62, in run_dm
gi.make_get_request(urljoin(url, 'api/tool_data/%s/reload' % data_table))
File "/usr/local/lib/python2.7/dist-packages/bioblend/galaxyclient.py", line 88, in make_get_request
r = requests.get(url, kwargs)
File "/usr/local/lib/python2.7/dist-packages/requests/api.py", line 72, in get
return request('get', url, params=params, kwargs)
File "/usr/local/lib/python2.7/dist-packages/requests/api.py", line 58, in request
return session.request(method=method, url=url, **kwargs)
File "/usr/local/lib/python2.7/dist-packages/requests/sessions.py", line 504, in request
prep = self.prepare_request(req)
File "/usr/local/lib/python2.7/dist-packages/requests/sessions.py", line 436, in prepare_request
hooks=merge_hooks(request.hooks, self.hooks),
File "/usr/local/lib/python2.7/dist-packages/requests/models.py", line 302, in prepare
self.prepare_url(url, params)
File "/usr/local/lib/python2.7/dist-packages/requests/models.py", line 382, in prepare_url
raise MissingSchema(error)
requests.exceptions.MissingSchema: Invalid URL 'api/tool_data/all_fasta/reload': No schema supplied. Perhaps you meant http://api/tool_data/all_fasta/reload?
afgane
commented
7 years ago
Below error was generated when running run-data-managers. I suppose this was because the galaxy url was not properly prepended to the /api part. With this fix the problem seems to be solved.