galaxyproject / galaxy-helm

Minimal setup required to run Galaxy under Kubernetes
MIT License
42 stars 39 forks source link

OSError: Error reading file '/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml': failed to load external entity "/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml" #503

Open HelloYLee opened 1 week ago

HelloYLee commented 1 week ago

HI, I didn't deploy s3fs or cvmfs but I use aliyun cloud oss bucket to create refdata pv & pvc, but some pods failed to start and I check pod logs found " OSError: Error reading file '/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml': failed to load external entity "/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml" " I found that /cvmfs/data.galaxyproject.org/ mounted to refdata pvc(oss bucket), but I have no idea how to get this data, please help!

afgane commented 1 week ago

Thanks for reporting this. We noticed a similar issue yesterday and are looking into it but haven't gotten to the bottom of it yet. Will update here as things progress.

ksuderman commented 6 days ago

@HelloYLee could you please try again? This may have been a transient error somewhere that seems to have resolved itself, at least my test cases are working again.

Nevermind, the resolution seems to have been a transient anomaly and /cvmfs/data.galaxyproject.org is broken again...