galaxyproject / galaxy-hub

Galaxy Community Hub
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Update Makefile for latest conda and yarn packages #2723

Open stain opened 4 months ago

stain commented 4 months ago

Note that you may have to do make build twice for some reason. Afterwhich make run works fine, at least on Mint 21.3.

bgruening commented 4 months ago

I will that one for @dannon not sure about the lock file update.

dannon commented 3 months ago

I need to dig up why we had to pin sharp back to 0.30.0 -- hopefully I left notes...

martenson commented 6 days ago

the removal of --force is a needed change, this fails on newer conda versions I think

conda env create --force --file=environment.yml
/opt/homebrew/Caskroom/miniforge/base/lib/python3.12/argparse.py:2006: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead.
  action(self, namespace, argument_values, option_string)
usage: conda [-h] [-v] [--no-plugins] [-V] COMMAND ...
conda: error: unrecognized arguments: --force