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broken links in public-galaxy-servers #341

Closed haruosuz closed 6 years ago

haruosuz commented 6 years ago

The following links are broken.

Publicly Accessible Galaxy Servers

VirAmp

Comments from Wan et al.: http://www.gigasciencejournal.com/content/4/1/19 "404 Not Found" should be https://www.ncbi.nlm.nih.gov/pubmed/25918639

BioMaS

Links BioMaS Galaxy http://galaxy.cloud.ba.infn.it:8080 "Internal Server Error" Comments BioMaS https://galaxyproject.org/BioMa/ "Page Not Found"

BitLAB

BitLAB Galaxy https://pistacho.ac.uma.es/galaxy/ "502 Bad Gateway" There is an extensive tutorial on how to use the server. http://www.bitlab-es.com/gecko/documents/GalaxyGuidedExercise.pdf

PublicGalaxyServers - Galaxy Wiki

ODoSE

Link: ODoSE: Ortholog Direction of Selection Engine http://www.odose.nl "503 Service Unavailable"

BISTRO

Link: BISTRO Galaxy http://galaxy.bioinfo-bistro.fr/galaxy/ PipeAlign workflow http://galaxy.bioinfo-bistro.fr/galaxy/u/kress/w/pipealign-2 "503 Service Unavailable"

MetaDP

MetaDP: a comprehensive web server for disease prediction of 16S rRNA metagenomic datasets

I wonder if MetaDP, ODoSE, and BISTRO have been removed from Publicly Accessible Galaxy Servers?

dannon commented 6 years ago

@haruosuz Sorry I do not follow where the links are from. I'm looking through https://galaxyproject.org/public-galaxy-servers/, which is the public server homepage now, and don't see the old, broken moin links. Can you elaborate?

haruosuz commented 6 years ago

@dannon Thank you for your reply. The links are from

dannon commented 6 years ago

@haruosuz Ahh! I see, I misunderstood. moin.galaxyproject.org is deprecated and unmaintained, but I will look into the other three.

dannon commented 6 years ago

@haruosuz Ok, I fixed what links I could, but it looks like the whole bitlab-es site is offline, and the biomas one is very slow to respond. We can check back later to see if the downtime is temporary, or permanent, and then take action (remove them from the list here, if they're gone forever).

haruosuz commented 6 years ago

@dannon Thank you. BitLAB site is now accessible. "Pylogenetics" should be "Phylogenetics" at https://galaxyproject.org/public-galaxy-servers/ and https://galaxyproject.org/public-galaxy-servers/osiris/ The link for "Pitagora-Galaxy Project" (http://www.pitagora-galaxy.org/about_en) is old and should thus be (http://wiki.pitagora-galaxy.org/wiki/index.php/Main_Page).

dannon commented 6 years ago

Fixed the Pylogenetics typo https://github.com/galaxyproject/galaxy-hub/commit/422c172cffa291dd27ac4a2118f41d9dd80b4481.

Thanks for the reports! If you'd like to, definitely feel free to change any of this sort of stuff on your own, too! We want folks to treat the galaxy hub like a wiki, making edits anytime they'd like.